S/MARt DB - S/MAR

AC  SM0000054
XX
DT  1.1.1999 00:00:00 (created); ili
DT  17.12.1999 11:02:28 (updated); ili
XX
NA  AT$ATH1-5MAR3
XX
OS  thale cress, Arabidopsis thaliana
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  magnoliopsida; dilleniidae; capparales; brassicaceae
XX
SZ  1431 bp
XX
LO  4
DE  G001342; Arabidopsis thaliana homeobox 1 gene
DP  Direction: 5'; 9388 - 7958; Pos 1: ATG
DN  Internal: n; Gene position numeral: 1
DC  homeobox protein ATH1 is suspected to be a transcription
DC  factor

G001342;
Arabidopsis thaliana homeobox 1 gene

XX
SQ  TCGAGGTACTTTAGGTAAGGAAGAGTCATATTCTTCAACAAGCTAGGATGTTTATGCACA
SQ  TAGACATTCCATTCATCCTTACTAATTTTACCGTCTTTGTCAGAATCTGCATCAGCAAAT
SQ  GTCTAGCAAAAACAAAGTAGAGAAAGAAAAGAAGCATGTGCTAACTAAATTTACCAAAAT
SQ  ATTATACATCACACTAAGAGAGATGGGATTTCAAGAACTCACTTTATCAATAATCATGGT
SQ  CAGAAGTTCATCGGATAGCATCATATCAGATTCCAAGAGAATAGCAGAAACCATTTGTTG
SQ  CACCTAACAAGTCCAACTTATTATGAAGCTGAAAAGAAGGGTTGCAACTTGCAATGGCAG
SQ  ATTATTATTTACCTCTTCTCGCTCAATGAATCCAGTTTGTCTTAGATCATAGAGCCTAAA
SQ  TGCAACTGTCACAGATAATAAAAGCATATGCTTGAGATCATCCAAGGAGTTATATTAGTA
SQ  GTAATATTGATCCTTACAATCGGTCTTCTCCTGGATTGATGCATAGGGATGAAAGACACT
SQ  GAGTGCATGGATGAATTCCTCAAACTCAATAACCCCATTCTTCTTTTCATCGAACAAATC
SQ  AAAAACCTGCAAAACACCAATCAATATAAAGTAAAAAAAACTTTCATCTCAACAAGTCCA
SQ  AGAAACCATGAGAAGCCACTCACCCTATCAAGAAAGAGGTTCTCACCATATGGAGCTTGG
SQ  AACAGCGCCAGTCTAAGCTCTTCCTAGGAAACCAGAAATATCAAATTTCTTCATAACCAT
SQ  AAATTATAATGAGAGATAACTATCATCTAAAAAGAGCAAACTTAATGCCTTGAAAGCAAT
SQ  GAATCACACACATAAAGGAAAAGGAGTCAAGTGATGATCATCAACCTATGAAAAATTCAC
SQ  CAACTAGACATATCTGAGAGAGAAAAAACAGACCTTGTGAATCAAGCCGTCATCAATAAT
SQ  TGAACAGCTCAATTTCTTGAATAGCTCATACAAAGCTTCAACTTCATTGACTGAAACTGC
SQ  AAAAAAGAAACAAACTTTTCAAACTTATCAACTTCCAAACAGAGTCATTTCGAAGACGCA
SQ  TTGATCCAAGAACGTATACAACACATTGGACATGAAATGAAAGAGAGAGAGAGAGAGAGA
SQ  GGCAAAAACAAAAAGAAAACCAACATTGAGATTCACGAGCAAGACGTTCCAGATCCGCGT
SQ  GCTGACATGTCCGAGGCGATGTGCTGCGGCAATCGAAGCATTGTCCGACGGAGGAAACTA
SQ  GGACATCGATAATGGCAAAGAAAGGTATAAAGACGGCGCAGAATTGCTCTCCGACAGTGA
SQ  GAGAGCTTGATCTCTGTTTCACCAAAACAAAACAAGAACAAGAACATTACAAAAAGACAA
SQ  AATCAGAGAAGAAATGAGAAATCAAAGTAGTGAGAAAAATTTACAGAGGAA
SC  EMBL #Z83320; nt 1-1431, release 52
XX
FT  362 - 369: MRS: small half site motif (8/8) [2]
FT  471 - 489: MAR-specific signature [1]
FT  478 - 493: MRS: large half site motif (15/16) [2]
XX
EV  in vitro selection of S/MAR [1]
EC  rat liver matrix
XX
DR  EMBL: Z83320; ATZ83320
XX
RN  [1]
RX  MEDLINE; 98026209 PubMed; 9380515
RA  van Drunen, C. M., Oosterling, R. W., Keultjes, G. M.,
RA  Weisbeek, P. J., van Driel, R., Smeekens, S. C.
RT  Analysis of the chromatin domain organisation around the
RT  plastocyanin gene reveals an MAR-specific sequence element
RT  in Arabidopsis thaliana
RL  Nucleic Acids Res. 25:3904-3911 (1997)
RN  [2]
RX  MEDLINE; 99380480 PubMed; 10390535
RA  van Drunen, C. M., Sewalt, R. G. A. B., Oosterling, R. W.,
RA  Weisbeek, P. J., Smeekens, S. C. M., van Driel, R.
RT  A bipartite sequence element associated with
RT  matrix/scaffold attachment regions
RL  Nucleic Acids Res. 27:2924-2930 (1999)
//