S/MARt DB - S/MAR

AC  SM0000068
XX
DT  1.1.1999 00:00:00 (created); ili
DT  27.2.2002 13:35:00 (updated); ili
XX
NA  SBI$Sh2-3MAR
XX
OS  Sorghum bicolor
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  liliopsida; commelinidae; cyperales; poaceae
XX
SZ  2651 bp
XX
DE  G001340; open reading frame
DP  Direction: 5'; Pos 1: ATG
DN  Internal: n; Gene position numeral: 1
DC  originally named gene X, located between Sh2 and A1a gene
DC  [1]; supposed to code for a transcription factor due to
DC  the presence of  putative protein-protein interaction and
DC  zinc finger domains [1] [2]
DE  G001343; ADP-glucose pyrophosphorylase large subunit
DP  Direction: 3'; Pos 1: ATG
DN  Internal: n; Gene position numeral: -1

G001343;
ADP-glucose pyrophosphorylase large subunit
G001340;
open reading frame

XX
SQ  CGGGGTCATCTCGGGATGAGGRGCATCCATGTGTGTGTGTTTAGGTACTCAAACCTTAGA
SQ  CCCTGTTTAGATTGGAGATAAAAAATTTTTTGGATGTCACATCGGATATGTCGGAAGGAT
SQ  GTCGGAAGAGATTTTTAGAAACTAWTAAAAAACAAATTACATAGCGGAAACTGCAAGACA
SQ  AATCTATTAAGCATAATTAATATGTCATTAGCACATTTTGGTTACTGTAGCACTTAAGGC
SQ  TAATCATGGACTAACTAGGCTTGAAAGATTCGTCTCGCGATTTTCAACCAGACTGTGTAA
SQ  TTAGTTTATTBTTTTATATACATTTAATGTTTCATGCATGTGTCCCAAAGATTCGATGGG
SQ  ATGGATGAAAAATTTTTGGGTGGGAAACTAAACAGGGCCTTAGACTGTAGTCCTATCACG
SQ  TCAGATATTTAACACTTATAACACTAATTTGAAATATTAAAATAGACTAATTACAAAACT
SQ  AATTCTACAGATAGAGACTATTTTTTTAATGAAATTATTAAGTCTATTTAGTATACGATT
SQ  TGACAATGTGATGTTACGGTAAGTATATGCTAATGATAGATTAATTAGGCTTAATAAATT
SQ  TGTCTCGCAAATTAGTCTTTTGTGTAATTAGTTTTATAATTAGCTCATATTTAGTACTTT
SQ  TAATTAGCATCCGAATATCCGATGTGACAGGGACTAAACTGGATTCAGACGCCCAACAGT
SQ  GGGAGGTTGAATGTGACCCCGAGTCGAGGCACCGCTACACATCCTTATCCAGATCCAGTG
SQ  AGACGATCGCATGCGAGGTGTCGTTCTCCTCTTGTAACTTAGATCCAGCTAGTCCTAAAC
SQ  CTTCAATCTCATCTTTCAAATTTACTAATCTCTAGGAGTTAGTTGGACACATCTAGCGGA
SQ  GTTCTCCCTCTCGATCGTTTGCGATAGTTGTAAGGTAGCCCCCAAAGTTTAGATCGCGAT
SQ  GCAGAATCAACGTAGAGGCAGTTAAAAGTTGGTTTGGTGCGGGCCGTAGTTGTTTTGGAT
SQ  CAAGTAGGCAAGGCCATGTCGTCGCATACGTGCTAGTGAGTAGTGACAATGTTCGCAAAG
SQ  GAAGGAGGTGACATTTGATAGAAGCTAGGGGACGAAGATGCTGTTAGGGTTGAAGAATAG
SQ  CAAGAGGTGGCACCAAAGTAGTAAGAATAAGAAGCAACATATGTTCATATGGCAGCATCA
SQ  AGATGAGACGCAGAAGAAGAATTATGAGTAGCGGGGTCTGATGAAACAGGATGCCCATGT
SQ  AGCTAGTGAGAAAACAGGGGAGCTTCCATCCACATGCAAGCAACACCCAAGAGGTACAAT
SQ  CCGAATCCGAATCCTAGAGTTGATTTTGAGATATGTTTCAGTGGTAGATCCAGAATAAAA
SQ  ATTTAGGGGGGCTAAGTTCGATCTGTTCAAAAGACACAAAGTCGTGGTTTTGCCAAAACT
SQ  AAGGCCTAAAGCTCCACTTCATGCCATCGTCTTCAACCTCAAGCTCCTCCAAACCTTTTC
SQ  CTATGGTTAAAATTTCAAGGGAGTTGAGGAGGGGCTCCATGGACATAGACGTGGTAGGGG
SQ  GGGGGGGGCAACCCGGTTGCAGATCCGCCTCTGGTTGTCTTATAAGTCATACCATGAGAT
SQ  TGTTGTAGAATGCATTGTAATATGTGTGGTCTGAGCAATCATGTGACATATGAATGCAAA
SQ  AAATGTCTCCATAGAGTCATGGGTTAGAATCATGTGCAACTTAGGTCAAAGATAACAACC
SQ  TTTTCTTTATTATGGAATGCATAGATGCTAGGGTCTCTAAGGAGAAAACAAGCACTACAT
SQ  TTTATTACTATGTTGAGTGGGTAAGTTACAGCCAAACAGATTGAGCAAGAATTCATGAAT
SQ  TTGGTTGGGAGTGATAGTTGGAGATTAAGTGCCAAGGAAGTGGCAATGAACAAATTTGTC
SQ  ATCGACTGTACTTAAAATAAGCCACAGACAACTGAGTCAGCTATTGCTTCTTTGTCTCTT
SQ  CTCACAAATTACTTTTTAAGTAGCTGGCTACGGCTTATTTTAAGTGCAACCGAACATCCT
SQ  AATGATAATGCCAAGATGGTTAAAGATTGGGCTTAAGTGGATGTACATATTAGCATTGGA
SQ  CCTTTGGACCCCAATTATTGGAACCAAAGGGAATCTACAACATGCACTGTTTAGGGTGAA
SQ  AGGAATTCCTACCGACTAGAGATCAATTTAGCTAAGGTTAGAGGGTTGGTGGGAAAGGTG
SQ  ACCGAAACTTATAAAAAGTTCAGATTCAGACTTGACTACATAAGAATGAAAATCGCATAT
SQ  AGAGACTTTGGAAGGGTTCTTAAATCTGCATAAAGTACTTTGGGAAAGTTTTTTCATGAC
SQ  TTCTAGTTTGAGAGGGAGATACTTGAGAAGCAATCTTCTGAAGGTGGAGATCAAGATTGG
SQ  AAATAGTGGAAATCAGCCTCCAGCAAAAAGATCAAAGCTAACTAGCCATGTAAAGAATGT
SQ  ATCAAAAGGTCATCATTATAATGATGAGAACAATGTAAATAAGAATGGTGACGATGGACA
SQ  TAATAAATCCAATTTAGTTTAAGAGAAGTTCAAGTCGAGTTCCTCAGCCTATCCAACACG
SQ  TTCCTTGTCAGGGGTATAGAGTATGTCGAGTGCCTTACTGCCCCCACACATCGGTAGAGC
SQ  CAGCTTGACTC
SC  EMBL #AF010283; nt 7050-9710
XX
FT  7118 - 7458(EMBL): miniature inverted repeat transposable
FT                     element [1]
FT  7198 - 7222(EMBL): A/T/C stretch of 25 nt
FT  7365 - 7374(EMBL): T box (TTWTWTTWTT) [1]
FT  7464 - 7763(EMBL): miniature inverted repeat transposable
FT                     element [1]
FT  7484 - 7508(EMBL): A/T/C stretch of 25 nt
FT  7512 - 7517(EMBL): BUR (AATATT) [1]
FT  7892 - 7916(EMBL): A/T/C stretch of 25 nt
FT  9034 - 9058(EMBL): A/T/C stretch of 25 nt
XX
FF  strong MAR as judged by band intensity in binding assay
FF  [1]
XX
EV  in vitro selection of S/MAR [1]
EC  sorghum leaf matrices
XX
DR  EMBL: AF010283; AF010283
XX
RN  [1]
RX  MEDLINE; 98108012 PubMed; 9443968
RA  Avramova, Z., Tikhonov, A., Chen, M., Bennetzen, J. L.
RT  Matrix attachment regions and structural colinearity in the
RT  genome of two grass species
RL  Nucleic Acids Res. 26:761-767 (1998)
RN  [2]
RX  MEDLINE; 98133900 PubMed; 9475753
RA  Chen, M., SanMiguel, P., Bennetzen, J. L.
RT  Sequence organization and conservation in sh2/a1-homologous
RT  regions of sorghum and rice
RL  Genetics 148:435-443 (1998)
//