S/MARt DB - S/MAR

AC  SM0000227
XX
DT  14.12.1999 15:07:56 (created); ili
DT  15.12.1999 18:09:40 (updated); ili
XX
NA  CAEEL$MARd
XX
OS  Caenorhabditis elegans
OC  eukaryota; animalia; metazoa; nematoda; secernentea;
OC  rhabditia; rhabditida; rhabditina; rhabditoidea; rhabditidae
XX
SZ  3178 bp
XX
LO  3
DE  G001605; hnRNP K
DP  Direction: 3'; Pos 1: ATG
DN  Internal: y; Gene position numeral: 0
DC  overlaps with the third intron of the M88.5 gene [1]
XX
SQ  CTAGATTTCATCCGTTTTCCCCTAACTTCAGAGCCTCGGTGCGTTCGTTGTTTTCAACCG
SQ  TTTTTGGGGAGATTATCTTGCAGACTTTCTCGGACCACAACAGCCGCCATCAGCTACAAC
SQ  TTCAGTAAGCGGTGCCGCAGGTGCACCATATCAAAGTGCAAGTGGTGGGAACAAAGAATT
SQ  TATGATGCAGCATCAGGTAAATGTTTAATTTGAACTTTTTGAACCTTACGGATTCGGCGG
SQ  CATTCGAATTAGTTTTTCATATTTGTTACATGTTTGCTCATCAATCTCAATGGTGCACCA
SQ  GAGAACTGTAAGAAATCGCTTTAAATTCGGATTTCGTGTTGAAAGCTGTGCTGTAAATCT
SQ  TTTCGGCAAACGTATTTTAGTTTCTGTCTAACTTTTCAAGTAAAAATTGTAGGAAAATGT
SQ  TCGTTCCATCTAATGATGTTTTTTGTTGAAAAGTCAAATAGTTGAAATGTTCGACTTTCT
SQ  GGCACTATTTGAGGTCTTTTCCGGTATTTTCCGCAAAAAAGATATCATTAGATCGAATTA
SQ  ACATTTTCCCACAATTTTTTAATTCAAAAAGTTAGGTCATCATACTGAAATTAACATAAG
SQ  TTTGCCGCACGTTTTCTTAAACTTATCAGACATCTTTCGGATTAGTTTTTAAGGAAAAAC
SQ  TATTTTCTTGTAAATAAATTTTTAAAAAATTGCTAACATACCTGAAATAATGCGTTGACC
SQ  AGACTTATGCAGCGTGTTCGTAATATGTATAATGCTCTCGAAACTAGAAACAAAATGCGC
SQ  TACTCTTGTATGCAAATTCCATTGTACTATCTCTGTCCGATTTACATATTCCCGAGCCTT
SQ  CTGTACTGCATTTCTTTTTTCCATATTTTATCGAATAAACTCGTCTTTTTATTTTCAATA
SQ  TTCCTTCGAGCGCACCCCTCGTAAATCGACACCAACCTCTCTTTTTTTTTGCCTCTTCAT
SQ  ACTCCGCTGCCTCCCATCTCCTTCTTCATCCTCCATCGTCCAGCAGTGTTCTTTCATTTC
SQ  TCCTAGGCACGGCTTCTCCTCACGCTTATTTCGTATTTTTCTATTGCCGCTCTCTATATT
SQ  CTGCACATTGACTAGCTCATTTTTTCCTCCGTGTCTTCTTCTTTCCTTCTAACGCTTGCA
SQ  CTCTGTTTGAAATTCGTTACTCCGCTCCGTCGTCGCAAAAACTGAACATTTTCCTTCTCG
SQ  CTATTATCAATTTTGGACTATTCGGGTTATTAAAGTTATTTTAAGTCGATAATTATCTGA
SQ  ATCATATTGACAATACATTGTCTAAAATGTTGGCAAAACGAGCCAAAAAGCCAGTAAGTA
SQ  TCTTGTTGATTCCTCTTTGCTCTCTTTCGTTTTCTGTTTAAGGTGGAGTAGCCAAAATAG
SQ  TCTGAAATGTAGAAATATTTAAAAATAAATCGAGTAAGAATACATCTCATTTTGGAGGGA
SQ  ATTGAAACAGGAAATTAAGATAAAATTTTGAAAATCTAGTATTAAAATTTCGGATTTATT
SQ  TTTCCGTTTTATGGTGATATTTCTTGATTTTTGAGCCAAATTTAAATGAGTCTTCAAGAC
SQ  ATTTTTTTAATAGAAATCATTGATTTTTCCTAATTTTTCATACAATTAGAATTCATACAT
SQ  ATGCAAAATACTAATAATAATAAAATTTCAGCAACGCCGTGGCAATCAGTCTGGTCAACA
SQ  GCAGCAAAATCAGCCGTCTCAACAAAATAATCAGCAACAACAGAATCAAGGCGCTCGTCA
SQ  ACAACATCCACAGCAGATGCAGCAACAGCAGCAATCAAACCAATCGGCCCATTTCATGCA
SQ  TCAGCAACTACAGGCCGTTCAACAGCAACAAGCCCAACAGATGCACCATCGTCTTCAAGG
SQ  AGCTCCGATCAATCCACAACAGTTCATGGTTCCACCACCAACAATGATGCAGCCTCAACA
SQ  GATGCAACAAGCTCAGCAGCAACAGGCTCAGCAAATGCATCAAATGCAGATTCATCATCA
SQ  ACAACATCCACAGATGATGCAGCAGCATGCTCAGCAGGTAAAAAAAACGATTTTTGTATA
SQ  TTTTTTTCGAATTTCACTTCAATCAAGCAGTTGAAGAATTAAAAAAACGTTCAGCAATAG
SQ  GAAATGTCGGATATTATCGAATTCAAAAAATTTTAAACTCAAATTGATGAAAAAATTATT
SQ  TTTTTGGCATTATATGTTTTCAGTGAAGAATACACTTCTCTGCTAACTAATTAAAATCGG
SQ  AAGACTTTAATATTTCATTCTGGAAAATGAACAGTTTTCAATAATTCTACAACTCGACAA
SQ  TTTTCCAGTTAAAAAATTTTCGATAATTTAATTTGTTATTATTAAATTGTGAAAATTAAC
SQ  AAATTTATCCAGTTTCAGGGTTATCATCCACATCAGCAGAACCAACAACACCAAGCTGGT
SQ  CAACATCAACAAAGTCATCATCAGAGTCAAAACCATAACCAACATCGCAATCACAATCAG
SQ  AGTCATTCGGGTCCACATCACATTCCACAGAATCTAATGATGCCTAGATGCATGGTAGGA
SQ  GTTTTCAAAAATTATTGTAGCTAGGAAAGTATCTCTAAAATTTTTGACAAAAATGAAAAA
SQ  TGCCTTAAATGATTAATTTATTACAGCTAAAAGACTGGCCGATTCGTTGTGTTGTTGAAG
SQ  GAAAATATCATGCGGTGATTATTGGACCAAATGGAAGTACTATCAAAGATATTGCTAGTT
SQ  CAACTCGTTGTCGTGTAGATTTCGTTAATCTTTCAAAGAAGGAAAGAACCGTTTTGGGAA
SQ  ATAATGATCGGATATTAACAGTTCATGGAGTTGCTGAACAAGCTACAAAAGCAGTTGCTC
SQ  GTATTTTGGATGTTATTCAAAGCGAGGCTGTTAAGGATGATGTCAATGTGTTAGTCTAAT
SQ  AAACATTAAATATTTATGAATTATATTCCTGAATTTGTAGAGGCGCTGACACGGTTCTCC
SQ  GTATGAGAGCTCACAATCAACTCTGTGGTCGTCTTATCGGCAAAGCTGGAAGTTCAATTA
SQ  AAGAAATTATGCAGAAAACTGGAACAAACATTACCGTAACCAAGTGAGGATTTAATTCTA
SQ  AAATTTTGTAAATTGGATCAAAGTTCCAGGTACATTGAACCACCAGGTGGTATTTCTGGA
SQ  CTCACTGCGAATGAATTACTTGGTCTTATGGAACGGACGATTATGGTTCGTGGACCAT
SC  EMBL #Z34802; nt 20910-24087
XX
FT  1633 - 1640: MRS: small half site motif (8/8), overlapping
FT                 the large half site [1]
FT  1634 - 1694: MRS: large half site motif (15/16) [1]
FT  1636 - 1643: MRS: small half site motif (8/8), overlapping
FT                 the large half site [1]
XX
EV  in vitro selection of S/MAR [1]
XX
DR  EMBL: Z34802; CEM88
XX
RN  [1]
RX  MEDLINE; 99380480 PubMed; 10390535
RA  van Drunen, C. M., Sewalt, R. G. A. B., Oosterling, R. W.,
RA  Weisbeek, P. J., Smeekens, S. C. M., van Driel, R.
RT  A bipartite sequence element associated with
RT  matrix/scaffold attachment regions
RL  Nucleic Acids Res. 27:2924-2930 (1999)
//