S/MARt DB - S/MAR

AC  SM0000384
XX
DT  11.12.2001 15:10:00 (created); ili
DT  12.12.2001 13:24:00 (updated); ili
XX
NA  RAPE$na1-MAR
XX
OS  rape, Brassica napus
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  magnoliopsida; dilleniidae; capparales; brassicaceae
XX
SZ  321 bp
XX
SQ  AGCTAGCGTGCTATCAATATCATAATGCATTCTGGCAAGTCATAGAACAATTCTGATTGG
SQ  TTTGAGNATTTGTGAGTTAAAGTAAGTTGATGTGCGTTTAAATAATTAATATAAATTTAC
SQ  ATCAAATAACACAATGAATTAAGTCCCATGTCCAGTAAATAACTTAAGCGTAAAAATATA
SQ  AGTAACGCATAGACTGTTAATTGTCAACTTCTGAATGAACGAACATATGAAATCATGCGG
SQ  AATGATTGAGAAAGAAACCATTGGTTTTAATTAAACATTATACCTTCAAAGGTTTTTAAC
SQ  CTGTCCGTCTAAGTCGAAGGT
SC  EMBL #AF101143; edited according [1]
XX
FT  251 - 265: found duplicated after S1 retroposon integration
FT               [1]
XX
FF  retroposon integration site [2]; matrix binding
FF  activity diminishes after S1retroposon integration [2]
XX
EV  in vitro selection of S/MAR [2]
XX
DR  EMBL: AF101143; AF101143
XX
RN  [1]
RX  MEDLINE; 98440763 PubMed; 9767691
RA  Tatout, C., Lavie, L., Deragon, J. M.
RT  Similar target site selection occurs in integration of
RT  plant and mammalian retroposons
RL  J. Mol. Evol. 47:463-470 (1998)
RN  [2]
RX  MEDLINE; 21312510 PubMed; 11419796
RA  Tikhonov, A. P., Lavie, L., Tatout, C., Bennetzen, J. L.,
RA  Avramova, Z., Deragon, J. M.
RT  Target sites for SINE integration in Brassica genomes
RT  display nuclear matrix binding activity
RL  Chromosome Res. 9:325-337 (2001)
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