S/MARt DB - S/MAR

AC  SM0000391
XX
DT  11.12.2001 15:26:00 (created); ili
DT  12.12.2001 15:34:00 (updated); ili
XX
NA  RAPE$na31-MAR
XX
OS  rape, Brassica napus
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  magnoliopsida; dilleniidae; capparales; brassicaceae
XX
SZ  484 bp
XX
SQ  TAGCGTAGAATTACTCATCAAAACTCTATTTTATAATGAAAATGGAGTAGGGTCAATATG
SQ  TTGTAAGTATGTATATAACAAGTGGTGGTTGGTATTCTACGTACGAGATATATGGAATTG
SQ  CTTATGTGCTAAAGAGCAAGTTTTTTTGTTTAATGCTTGCTTAAGAGCAAGTTAAAACTC
SQ  AATCAAGAAACTTTTGGTCAATTTTATGTCGATAGAAAGGTTTAATACAATTAGGATCTG
SQ  TTAACAACGAAGCCTAATTAAAGAAAATTTACGTCGATAGAAACTTTTGGTCAATTCTAC
SQ  GTCGATAAATAGGTGTTTCATGATGGCGTCAAGGATACATTCACACAAATACATTTGAGA
SQ  TCTGTTAGCTAGAAAGTCCGATGAAAATACAGTTGTTTTCCTCTCAAGATGGCTCTGAAA
SQ  TATATGAATACCAAAAACAGAAAAGACCGCAATTTTGACTTATGGATACAGATAAGACTT
SQ  GTGG
SC  EMBL #AF223671; edited according [1]
XX
FT  246 - 259: found duplicated after S1 retroposon integration
FT               [1]
XX
FF  retroposon integration site [2]; forfeits its matrix
FF  binding activity after S1 retroposon integration [2]
XX
EV  in vitro selection of S/MAR [2]
XX
DR  EMBL: AF223671; AF223671
XX
RN  [1]
RX  MEDLINE; 98440763 PubMed; 9767691
RA  Tatout, C., Lavie, L., Deragon, J. M.
RT  Similar target site selection occurs in integration of
RT  plant and mammalian retroposons
RL  J. Mol. Evol. 47:463-470 (1998)
RN  [2]
RX  MEDLINE; 21312510 PubMed; 11419796
RA  Tikhonov, A. P., Lavie, L., Tatout, C., Bennetzen, J. L.,
RA  Avramova, Z., Deragon, J. M.
RT  Target sites for SINE integration in Brassica genomes
RT  display nuclear matrix binding activity
RL  Chromosome Res. 9:325-337 (2001)
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