S/MARt DB - S/MAR

AC  SM0000392
XX
DT  11.12.2001 15:27:00 (created); ili
DT  12.12.2001 15:36:00 (updated); ili
XX
NA  RAPE$na32-MAR
XX
OS  rape, Brassica napus
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  magnoliopsida; dilleniidae; capparales; brassicaceae
XX
SZ  484 bp
XX
SQ  TGAAGGCGAGGTGTTCTATGAACTTCTCGAAAATCGTTTGTATGATTCTAAACAACCGTC
SQ  CAAAGATTATTTCGTAAACGCTGATTTTCGTATTGTTTTACGAAGGTTATTATATTAGGT
SQ  CGCTTATTTTTACTATACAAAAGTTTCTTCATTTAAACATCAATTGAAAGCCGTTTGCTA
SQ  TATTCTTTGTTGTAAGTATGTTTTGTTGGATGACTTTTATTCACGAATAAACTCTTAGGT
SQ  TTTTCTTAGAAAGGATCGTGTTTCGGATAATTTCGTCATAATGTGTAACGACCCGGTTAT
SQ  TAAGAAAACAATGGTCGGTTTGGTTTGTTCTAATTTTATTTTAATTTCACCTAAACCATT
SQ  TGGTTTGAATTTAATTAATTAGCCTTTAAACCAAACCCTTGTGTTGTCGTTGGTTAGTGG
SQ  CATATATATGTATTCAGTTCTTTCCCCAATAACCTAGCCGTCTCCATCTCGGGCTTGTGT
SQ  ACAG
SC  EMBL #AF223672; edited according [1]
XX
FT  194 - 212: found duplicated after S1 retroposon integration
FT               [1]
XX
BP  weak [2]
XX
FF  retroposon integration site [2]; matrix binding
FF  activity not changed by S1 retroposon integration [2]
XX
EV  in vitro selection of S/MAR [2]
XX
DR  EMBL: AF223672; AF223672
XX
RN  [1]
RX  MEDLINE; 98440763 PubMed; 9767691
RA  Tatout, C., Lavie, L., Deragon, J. M.
RT  Similar target site selection occurs in integration of
RT  plant and mammalian retroposons
RL  J. Mol. Evol. 47:463-470 (1998)
RN  [2]
RX  MEDLINE; 21312510 PubMed; 11419796
RA  Tikhonov, A. P., Lavie, L., Tatout, C., Bennetzen, J. L.,
RA  Avramova, Z., Deragon, J. M.
RT  Target sites for SINE integration in Brassica genomes
RT  display nuclear matrix binding activity
RL  Chromosome Res. 9:325-337 (2001)
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