S/MARt DB - S/MAR

AC  SM0000393
XX
DT  11.12.2001 15:27:00 (created); ili
DT  12.12.2001 15:37:00 (updated); ili
XX
NA  RAPE$na34-MAR
XX
OS  rape, Brassica napus
OC  eukaryota; viridiplantae; embryobionta; magnoliophyta;
OC  magnoliopsida; dilleniidae; capparales; brassicaceae
XX
SZ  521 bp
XX
SQ  CTGACAAGATTGTATCATCCAAAAAAGCAATTAATATAAGAAAATAGTTATTTGATATGA
SQ  ATTAACATTGTTTTCGTAACTTATCTTTAATATATCTAAAATTTTAGAAAGTAAGTTATA
SQ  ATAATTTATTTATTGTATATTTTAAACAAAAAATATCATAAAACTATAGAACATATGTAA
SQ  CATATATTTTCATTTTTTCAATTAAAAACTAGAAAAATCTAAAAACTTATGTGACAAAAC
SQ  TGATGATTAGTATTTTGCATAATTTGCCTTCCATGGTTTGTTATAAACTAATACCATGCA
SQ  TAGCTGATTGTCATAATAATAAGTATAAAAATTATAAATATATCATTAACTCTGGCTCAT
SQ  GTTATAACAACTTTTCATGTAAGGTAAGATAAAATGTACTAATGTAAGAATACTTATATA
SQ  TACACATGTAAATTATGATAAGAGTATGTTGATTGTTGATTATGGAAAGCTAGGGCCGCT
SQ  CAAAAGAGCCATGATCGCTCAGAGGAGACAAGATCGCTCAG
SC  EMBL #AF223673; edited according [1]
XX
FT  236 - 249: found duplicated after S1 retroposon integration
FT               [1]
XX
FF  retroposon integration site [2]; affinity to the
FF  nuclear matrix increases after S1 retroposon integration
FF  [2]; complete loss of binding potential after
FF  methylation of the S1 retroposon [2]
XX
EV  in vitro selection of S/MAR [2]
XX
DR  EMBL: AF223673; AF223673
XX
RN  [1]
RX  MEDLINE; 98440763 PubMed; 9767691
RA  Tatout, C., Lavie, L., Deragon, J. M.
RT  Similar target site selection occurs in integration of
RT  plant and mammalian retroposons
RL  J. Mol. Evol. 47:463-470 (1998)
RN  [2]
RX  MEDLINE; 21312510 PubMed; 11419796
RA  Tikhonov, A. P., Lavie, L., Tatout, C., Bennetzen, J. L.,
RA  Avramova, Z., Deragon, J. M.
RT  Target sites for SINE integration in Brassica genomes
RT  display nuclear matrix binding activity
RL  Chromosome Res. 9:325-337 (2001)
//