S/MARt DB - S/MAR

AC  SM0000413
XX
DT  22.2.2002 17:20:00 (created); ili
DT  22.2.2002 17:30:00 (updated); ili
XX
NA  HS$D19S208_1
XX
OS  human, Homo sapiens
OC  eukaryota; animalia; metazoa; chordata; vertebrata;
OC  tetrapoda; mammalia; eutheria; primates
XX
SZ  299 bp
XX
LO  19q13.12
DE  G002990; domain-containing ion transport regulator 5
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: -1
DE  G002991; 
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 1
DE  G002993; upstream transcription factor 2
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 2
DE  G002996; liver-expressed antimicrobial peptide
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 3
DE  G003000; CD22 antigen
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 5
DE  G003006; myelin associated glycoprotein
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 4
DC  note: two intronic MARs  have also
DC  been assigned to the MAG gene [1]

G002990;
domain-containing ion transport regulator 5
G002991;
G002993;
upstream transcription factor 2
G002996;
liver-expressed antimicrobial peptide
G003006;
myelin associated glycoprotein
G003000;
CD22 antigen

XX
SQ  GTACACTAGTCCGCTGTAAAAAGAAATTTTGATCTTACTGCATGCTACATGGCTTCGACA
SQ  TACTACAACATGGATGGACCTTGAAAACATTATTCTTTGTGAAATAAACTAGACACAGGA
SQ  CAAATGTTAGACGATTCCACTTATATGAGGCACCTAGAATGGGCAATTTGGTAAGCAAAG
SQ  TAGAATAGAAATTACTAGGGGCACAGGTAGCAGGGAATGGGGAGTTACTGTTTAATGGTC
SQ  ACAGAGTTTATGTTGGGGATGATGAAACAGTTTCGGGGATAAAGAGTGGTGATTGGTAC
SC  [L. Nikolaev, direct submission]
XX
BP  40% [1]
TP  suggested a structural role [1]
XX
EV  in vitro selection of S/MAR [1]
XX
DR  EMBL: AC002128; HSAC2128
XX
RN  [1]
RX  MEDLINE; 21671420 PubMed; 11813264
RA  Chernov, I. P., Akopov, S. B., Nikolaev, L. G., Sverdlov,
RA  E. D.
RT  Identification and mapping of nuclear matrix-attachment
RT  regions in a one megabase locus of human chromosome
RT  19q13.12: long-range correlation of S/MARs and gene
RT  positions
RL  J. Cell. Biochem. 84:590-600 (2002)
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