S/MARt DB - S/MAR

AC  SM0000417
XX
DT  22.2.2002 17:52:00 (created); ili
DT  22.2.2002 17:54:00 (updated); ili
XX
NA  HS$D19S208_5
XX
OS  human, Homo sapiens
OC  eukaryota; animalia; metazoa; chordata; vertebrata;
OC  tetrapoda; mammalia; eutheria; primates
XX
SZ  664 bp
XX
LO  19q13.12
DE  G000262; glyceraldehyde-3-phosphate dehydrogenase
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 2
DE  G001340; open reading frame
DP  Direction: 3'; Pos 1: ATG
DN  Internal: n; Gene position numeral: 1
DE  G003001; 
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 3
DE  G003002; H,K-ATPase alpha subunit
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 4

G001340;
open reading frame
G000262;
glyceraldehyde-3-phosphate dehydrogenase
G003001;
G003002;
H,K-ATPase alpha subunit

XX
SQ  GATCCTTACCTTTCTCACAAGGTATCTAAAATTCCATCCATTGGGCATTCAATGGACTCT
SQ  TCCAGTCTACAAAATAATTTCCTTCCATTTGGGAAGATTCTCTTGAAACACTTTGTGATG
SQ  GTTTCCTTGCCTTCATTTTCTCTCTTCTCTCCTTCTGGAATCCTTGTTATTTGGGGGACA
SQ  CTGCACCTCTTACACGGCCCTCTAATTTTCCCTTTTTTCCCATTTTTTCTCTCCCCATTG
SQ  TTTTGCTTTACTTTCTGTGAGATTTTCTTATCTTCCAGCCCTTCTATTTTTCATTTTTGC
SQ  TATCACTTTTCATTTCTGAGCACATTTTTATTCCTTCTTAGCATGCTGACCTTGTTTCAT
SQ  GATTGCAATGTCCACTCTGATTTCTCTGAGGAATCTTCATCTCCCTGCTCTAAGATGCCT
SQ  TTTTTGGTGTCAGTTGCTATATTTTATGTTAGAAGTTGTCATCATATATATGGTAATTCT
SQ  TGGTTGTCTGCTCACATTGAAGAGAAGGGAAGGGACTACTTTTTTTTAGATACATAAAAC
SQ  GTATATAAAGGCACTATGACATGATGTCTAAACCAGAAAAGAATGGTTGAGTGCCATGGC
SQ  TCACACCTGTAATCTCAGCACTTTGGGAGGCCAAAGCTGAAGGATTGCTTGAGCCCAGGA
SQ  GATC
SC  [L. Nikolaev, direct submission]
XX
BP  20% [1]
TP  suggested a structural role [1]
XX
EV  in vitro selection of S/MAR [1]
XX
DR  EMBL: AC002997; AC002997
XX
RN  [1]
RX  MEDLINE; 21671420 PubMed; 11813264
RA  Chernov, I. P., Akopov, S. B., Nikolaev, L. G., Sverdlov,
RA  E. D.
RT  Identification and mapping of nuclear matrix-attachment
RT  regions in a one megabase locus of human chromosome
RT  19q13.12: long-range correlation of S/MARs and gene
RT  positions
RL  J. Cell. Biochem. 84:590-600 (2002)
//