S/MARt DB - S/MAR

AC  SM0000418
XX
DT  22.2.2002 18:13:00 (created); ili
DT  22.2.2002 18:15:00 (updated); ili
XX
NA  HS$D19S208_6
XX
OS  human, Homo sapiens
OC  eukaryota; animalia; metazoa; chordata; vertebrata;
OC  tetrapoda; mammalia; eutheria; primates
XX
SZ  677 bp
XX
LO  19q13.12
DE  G000262; glyceraldehyde-3-phosphate dehydrogenase
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: -3
DE  G001340; open reading frame
DP  Pos 1: ATG
DN  Internal: n; 
DC  note: a total of four putative genes can be assigned [1]
DE  G003001; 
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: -2
DE  G003002; H,K-ATPase alpha subunit
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: -1
DC  about 10 kb upstream of ATP4A [L. Nikolaev, direct
DC  submission]
DE  G003003; cytochrome C oxidase subunit VIb
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 2
DE  G003004; uroplakin 1A
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 3
DE  G003011; testis zinc finger protein
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 4
DE  G003012; trithorax homologue 2
DP  Direction: 5'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 5
DE  G003013; proline oxidase 1
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 8
DC  note: an intronic MAR SM0000419 has also been assigned to
DC  the POX 1 gene [1]
DE  G003014; nephrosis 1, nephrin
DP  Direction: 3'; Pos 1: transcriptional start
DN  Internal: n; Gene position numeral: 9
DC  note: an intronic MAR SM0000420 has also been assigned to
DC  the NPHS 1 gene [1]

G003001;
G003002;
H,K-ATPase alpha subunit
(2 -0)
G003003;
cytochrome C oxidase subunit VIb
G003004;
uroplakin 1A
G003011;
testis zinc finger protein
G003012;
trithorax homologue 2
(8 -5 ) (8 -5 )
G003013;
proline oxidase 1
G003014;
nephrosis 1, nephrin

XX
SQ  GTACTTGTTTCTAAGCCTGTCTTAGTTTGTTTGTTCCACTATCCAAGGGACTTGCCAGCA
SQ  ACCAATACACATGCTTCATCTCACCCAACCTTCACTTCTGTCTTCCCCCACCTCGGCGCC
SQ  CCATGTTCTGTTGTCCTGGAACATCCACTTGGTCCTTTGAAAGGCTCTGAATCAATTTCC
SQ  TCCATGAAGAATATCCTGACTTCTGGATTGCATGTGTTGTCACTGTTCTTCTAACTACTT
SQ  CTAGGTCCAGGACTGGTCTTAAATACCCAGGTTGTGTCTTGGACTAGCCATACTAAGGTC
SQ  TACATTTGTGGACTGCACAGTGTCACCTCCCACCCACCCCCAACTTCCTGAAAAGTGGCT
SQ  CCTCAAACCCTCTACTCCCCTAGAACCACCAGCTAAAGGAAGCATCAGCTAAAACCCCAC
SQ  AGTATTAGCATTCATTAAAAGCTCCTACCTGAATCAGCAATTACTATGGTATTTGAAAAT
SQ  GTTCTCTAATGGTGCATAACAAATTCCCCACAGGTATTAACTCACAGTTCTGTAGGTCAG
SQ  AATGGCTGCTTCTCTGCTCAGAATCTACCAAAGCTAAAATTAAGGTGTCAGCTGGGCTGG
SQ  GTTCTCATGTGGAGCTCAGGATCCTCTTCCAAATGAATGTGATTACAGCAGGATTCACAT
SQ  CCTTGCTGTTGCAGTAC
SC  [L. Nikolaev, direct submission]
XX
BP  30% [1]
TP  suggested a structural role [1]
XX
EV  in vitro selection of S/MAR [1]
XX
DR  EMBL: AC002115; HSAC2115
XX
RN  [1]
RX  MEDLINE; 21671420 PubMed; 11813264
RA  Chernov, I. P., Akopov, S. B., Nikolaev, L. G., Sverdlov,
RA  E. D.
RT  Identification and mapping of nuclear matrix-attachment
RT  regions in a one megabase locus of human chromosome
RT  19q13.12: long-range correlation of S/MARs and gene
RT  positions
RL  J. Cell. Biochem. 84:590-600 (2002)
//